Hello Glen,

I advise upgrading to the latest dist release - it includes performance 
improvements for displaying data libraries that contain many folders / library 
datasets.  The change set that helps this issue disabled problematic eager 
loading on data libraries. Very large data libraries will load two to three 
times quicker.  See our news brief at 
https://bitbucket.org/galaxy/galaxy-central/wiki/Features/DevNewsBrief/2011_04_08
 for details.

Perhaps you've discovered a different problem, but upgrading will at least 
eliminate some known issues.

Greg Von Kuster

On Apr 15, 2011, at 10:54 AM, Glen Beane wrote:

> 
> On Apr 15, 2011, at 7:15 AM, Glen Beane wrote:
> 
>> I have been having trouble uploading a large number of fastq files to a 
>> library (180).  I am uploading a directory of files, and I am not copying 
>> the files into Galaxy.
>> 
>> When I try to view the files in the library after uploading it takes a long 
>> time to load the library view (sometimes it times out), and when it does 
>> load it lists every file three times so instead of there being 180 fastq 
>> files in the library there are 540.  I have tried this multiple times after 
>> deleting the library and starting over, and each time it looks like there 
>> are three copies of each file.
>> 
>> Has anyone else had trouble uploading a large number of fastq files into a 
>> library at the same time?  I tried to delete a bunch of the duplicate files 
>> but it just timed out.
> 
> 
> I ended up creating 6 libraries, and split the files between these with no 
> problems.  It seems there is a problem when uploading a large number of files 
> into a single library.   I could open the library maybe one time out of 6, 
> the rest it would time out, and when it did open each file showed up three 
> times.  After I split between 6 different libraries they open almost 
> instantly and each file shows up once.
> 
> I am running the last dist release, not the most recent one.
> 
> 
> 
>> 
>> 
>> 
>> --
>> Glen L. Beane
>> Senior Software Engineer
>> The Jackson Laboratory
>> (207) 288-6153
>> 
>> 
>> 
>> 
>> 
>> ___________________________________________________________
>> Please keep all replies on the list by using "reply all"
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> 
> --
> Glen L. Beane
> Senior Software Engineer
> The Jackson Laboratory
> (207) 288-6153
> 
> 
> 
> 
> 
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
> 
>  http://lists.bx.psu.edu/

Greg Von Kuster
Galaxy Development Team
g...@bx.psu.edu



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