Regarding the tools contained in fml_gff_converter_programs.tar.bz2, the
following xml files are not well formed due to the malformed "<! -- TODO EDIT
HERE >" tag:
In addition, none of these files include the required "version" attribute in
the <tool> tag.
The same goes for the files in ~/gff_groomer/fml_gff_groomer/galaxy - they are
not well-formed due to the same <! -- TODO EDIT HERE > tag, and they do not
include the "version" attribute int the <tool> tag. Tools tags should look
something like this:
<tool id="fml_bed2gff" name="BED_to_GFF3" version="1.0.0">
I've made some enhancements to the tool shed code that will display errors like
this ( rather than resulting in the current server error ), so the next time I
update the tool shed ( within the next couple of days ), this problem will be
In the meantime, if you make the above corrections, you should have no problems
uploading your tools to the tool shed.
Thanks very much for pointing out these issues, and for taking the time to
contribute your tools to the Galaxy community.
Greg Von Kuster
On Apr 18, 2011, at 3:58 PM, Vipin TS wrote:
On Apr 18, 2011, at 11:28 AM, Vipin TS wrote:
> Dear Galaxy team,
> I would like to upload a set of converter programs available for Generic
> Feature Format (GFF).
> When I tried to upload to Galaxy tool shed using my user name
> vipin...@tuebingen.mpg.de, it gives me Server error message.
> I am using a *.bz2 file for uploading. It will be great if you can have a
> look on this issue.
> thanks in advance,
> Vipin T S
> Friedrich Miescher Laboratory
> of the Max Planck Society
> Spemannstrasse 39, 72076
> Tuebingen, Germany
> Tel:+49 7071 601 824
> Please keep all replies on the list by using "reply all"
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Greg Von Kuster
Galaxy Development Team
Please keep all replies on the list by using "reply all"
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