Without seeing an error message I'll guess that issue is that there is no C interpreter. Your program is a compiled executable.
Try the following and let me know (including any error messages) if it doesn't work: <command> shortest_path $infile1 $output </command> -Dannon On Apr 22, 2011, at 2:12 AM, liyanhui607 wrote: > Dear Sir, > We have a program writen in C lanuage. It can run nomally in linux > environment. > We plan to add it to galaxy, but it did not work. > The C file after complie named "shortest-path" > The shortest-path.xml is as follow: > Could anybody tell me what is wrong ? why it does not work? > Thank you very much! > > Best Wishes! > > Yan-Hui Li > > > <tool id="shortest_path_1" name="shortest_path"> > <command interpreter="C">./shortest_path $infile1 $output > </command> > <inputs> > <param format="text" name="infile1" type="data" > label=" > expressed_genes_20101024.hprd8_biogrid-2.0.58.adj_matrix.txt > "/> > </inputs> > <outputs> > <data format="tabular" name="output" /> > </outputs> > <tests> > <test> > <param name="input" value="1"/> > <param name="input" > value="../GEO_dataset/expressed_genes_u133a.6k_u133p2.8k_20101024.txt"/> > <param name="input" > value="../ppi/hprd8_biogrid-2.0.58.ppi.txt"/> > <output name="out_file1" > file="expressed_genes_20101024.hprd8_biogrid-2.0.58.ppi.txt"/> > </test> > </tests> > </tool> > > > 体验网易邮箱2G超大附件，轻松发优质大电影、大照片，提速3倍! > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/