Hi Florent,

I installed MacPorts this afternoon, but that was after I installed gnuplot 
(sudo make install).  Have you found that gnuplot works in Galaxy if installed 
through MacPorts?  Thanks for the suggestion.

Jeff


On Apr 23, 2011, at 7:03 PM, Florent Angly wrote:

> Hi Jeff
> Some of these tools can be installed easily on Mac OS using MacPorts
>     port search gnuplot
> Of course, you have to install MacPorts first.
> Florent
> 
> On 23/04/11 01:25, Whyte, Jeffrey wrote:
>> Hi Everyone,
>> 
>> I'm having trouble getting some of the tools to work on my local 
>> installation of Galaxy on a Mac (OS X version 10.6.7).  The instructions on 
>> the GetGalaxy wiki are clear, and I was able to download and install from 
>> the anonymous Mercurial repository.  Galaxy starts up and runs just fine for 
>> tools like "Get Data", "FASTQ Groomer", and "FASTQ Summary Statistics".
>> 
>> The problems started when I try to run Graph/Data Display ->  Boxplot 
>> (GnuPlot).  I get the error:
>> 
>> "An error occurred running this job:/bin/sh: gnuplot: command not found
>> Error running gnuplot."
>> 
>> The FASTX Barcode Splitter also gives me an error:
>> 
>> "An error occurred running this 
>> job:/Users/Me/galaxy-dist/tools/fastx_toolkit/fastx_barcode_splitter_galaxy_wrapper.sh:
>>  line 65: fastx_barcode_splitter.pl: command not found
>> zcat: /Users/Me/galaxy-dist/database/files/000/dataset_10.dat.Z: No such 
>> file or directory
>> sed: illegal opt"
>> 
>> I'm assuming these are Tool Dependency problems, although I have tried to 
>> install the OS X versions of GnuPlot and the FASTX Toolkit and still get 
>> errors.
>> 
>> Are there any suggestions from users who are successfully running Galaxy on 
>> OS X?
>> 
>> Thanks in advance,
>> Jeff
>> 
>> 
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