Hi David

Have you looked into the excellent "Galaxy Unix-Tools" package created by Gordon Assaf?


http://hannonlab.cshl.edu/galaxy_unix_tools/index.html

The "Find & Replace text in line/column" tool is probably what you are looking for:

http://hannonlab.cshl.edu/galaxy_unix_tools/galaxy.html#find_and_replace


regards, Hans



On 04/25/2011 11:20 PM, Jennifer Jackson wrote:
Hello David,

There are tools to select data based on defined attributes or to perform
calculations on existing data (Text Manipulation, Filter and Sort), but
as such no direct user-defined substitution tools.

Very sorry for any inconvenience,

Best,

Jen
Galaxy team

On 2/23/11 9:26 AM, David Hoover wrote:
Is there a tool for doing a global or column-based substitution in a
text or tabular file? For example, replace all instances of the number
2 in a column to a number 1?


David Hoover
Helix Systems Staff
http://helix.nih.gov


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