Hi Jen,

Thanks.

Yes, the problem is solved. I was running it within our Galaxy VM which had
some missing system files.

Cheers,
Leon

On Tue, Apr 26, 2011 at 6:33 PM, Jennifer Jackson <j...@bx.psu.edu> wrote:

> Hello Leon,
>
> Are you still experiencing problems with your local install? Could you
> confirm that you have attempted this again with the current distribution
> (April 8th) and have completed the NGS Tool set up as described in our wiki?
> Once we know everything is current it will be easier to offer more help.
>
> https://bitbucket.org/galaxy/galaxy-central/wiki/NGSLocalSetup
>
> galaxy-dist% hg pull -u -r 50e249442c5a
> https://bitbucket.org/galaxy/galaxy-central/wiki/Features/DevNewsBriefs
>
> Best!
>
> Jen
> Galaxy team
>
>
> On 3/19/11 10:30 AM, Leon Mei wrote:
>
>> Dear colleagues,
>>
>> I have a local installed Galaxy. When I try to run bowtie to align a
>> small FASTQ file, I got the following message and the result was
>> empty.
>>
>> """
>> empty, format: sam, database: Project-Id-Version: PACKAGE VERSION
>> Report-Msgid-Bugs-To: POT-Creation-Date: 2008-09-21 18:33+0900
>> PO-Revision-Date: 2009-03-17 03:55-0400 Last-Translator: FULL NAME
>> Language-Team: en Plural-Forms: nplurals=2; plural=(n != 1)
>> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8
>> Content-Transfer-Encoding: 8bit Generated-By: Babel 0.9.4
>> Info:
>> """
>>
>> It seems bowtie_wrapper.py wasn't executed at all. Has someone seen
>> this message before and what could be the cause?
>>
>> Thanks,
>> Leon
>>
>>
>>
> --
> Jennifer Jackson
> http://usegalaxy.org
> http://galaxyproject.org
>



-- 
Hailiang (Leon) Mei
Netherlands Bioinformatics Center (http://www.nbic.nl/)
Skype: leon_mei    Mobile: +31 6 41709231
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