Hi Branden,

I find a wiki documentation here,

https://bitbucket.org/galaxy/galaxy-central/wiki/DataTables

Hope this will help you to experiment a bit around.

regards, Vipin

 Does anybody have any idea why I would be getting this error before the
> tool runs?
>
> --
> Branden Timm
> Great Lakes Bioenergy Research Center
> bt...@wisc.edu
>
>
> On 4/19/2011 10:45 AM, Branden Timm wrote:
>
>  Hi All,
>   I'm having issues running BWA for Illumina with the latest version of
> Galaxy (5433:c1aeb2f33b4a).
>
> It seems that the error is a python list error while preparing the job:
>
>  Traceback (most recent call last):
>   File "/home/galaxy/galaxy-central/lib/galaxy/jobs/runners/local.py", line 
> 58, in run_job
>     job_wrapper.prepare()
>   File "/home/galaxy/galaxy-central/lib/galaxy/jobs/__init__.py", line 371, 
> in prepare
>     self.command_line = self.tool.build_command_line( param_dict )
>   File "/home/galaxy/galaxy-central/lib/galaxy/tools/__init__.py", line 1575, 
> in build_command_line
>     command_line = fill_template( self.command, context=param_dict )
>   File "/home/galaxy/galaxy-central/lib/galaxy/util/template.py", line 9, in 
> fill_template
>     return str( Template( source=template_text, searchList=[context] ) )
>   File 
> "/home/galaxy/galaxy-central/eggs/Cheetah-2.2.2-py2.6-linux-x86_64-ucs4.egg/Cheetah/Template.py",
>  line 1004, in __str__
>     return getattr(self, mainMethName)()
>   File "DynamicallyCompiledCheetahTemplate.py", line 106, in respond
> IndexError: list index out of range
>
> I checked the bwa_index.loc file for errors, it seems that the line for the
> reference genome I'm trying to map against is correct (all whitespace is tab
> characters):
> synpcc7002      synpcc7002      Synechococcus
> /home/galaxy/galaxy-central/bwa_
> indices/SYNPCC7002
>
> I'm not sure what the next troubleshooting step is, any ideas?
>
> --
> Branden Timm
> bt...@glbrc.wisc.edu
>
>
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