We recently updated the Cufflinks/compare/diff wrappers to be compatible with
v1.0.* ; the wrappers are available in galaxy-central and should be available
in galaxy-dist in the next couple weeks as we're planning another release soon.
New features in v1.0.* have not been implemented in these updates (and, in
fact, there are features from 0.9.* that are still not available); the changes
we made were simply to ensure that the wrappers' current functionality works
with the new versions.
In the next couple months we plan to extend the current wrappers to include new
functionality. However, community contributions that extend the current
wrappers to include new functionality would be most welcome, and we can
integrate them into the galaxy code base if/when they are available.
On May 10, 2011, at 7:53 AM, Sarah Diehl wrote:
> Hello everybody,
> I just found out that there was a major update to cufflinks on 5/5/2011. At
> least for us it now makes no sense anymore to use the old version, besides
> the fact that the cufflinks team highly recommends upgrading. Does anybody
> already have new wrappers for all the cuff... tools ready? Do you know
> if/when the Galaxy codebase will be updated to the new cufflinks version?
> Best regards,
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Please keep all replies on the list by using "reply all"
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