Sarah, We recently updated the Cufflinks/compare/diff wrappers to be compatible with v1.0.* ; the wrappers are available in galaxy-central and should be available in galaxy-dist in the next couple weeks as we're planning another release soon.
New features in v1.0.* have not been implemented in these updates (and, in fact, there are features from 0.9.* that are still not available); the changes we made were simply to ensure that the wrappers' current functionality works with the new versions. In the next couple months we plan to extend the current wrappers to include new functionality. However, community contributions that extend the current wrappers to include new functionality would be most welcome, and we can integrate them into the galaxy code base if/when they are available. Best, J. On May 10, 2011, at 7:53 AM, Sarah Diehl wrote: > Hello everybody, > > I just found out that there was a major update to cufflinks on 5/5/2011. At > least for us it now makes no sense anymore to use the old version, besides > the fact that the cufflinks team highly recommends upgrading. Does anybody > already have new wrappers for all the cuff... tools ready? Do you know > if/when the Galaxy codebase will be updated to the new cufflinks version? > > Best regards, > Sarah > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
