Shantanu Pavgi wrote:
> I need some help in configuring galaxy with SGE scheduler using unified
> method. The galaxy is running on a system distinct from SGE scheduler
> install. The cluster nodes can access galaxy install, galaxy-tools and
> dataset files using NFS. I am not sure how drmaa works and how galaxy submits
> jobs to the cluster/scheduler. Do we need specify some type of connection
> string or ssh-config to connect with the cluster/scheduler? Does it need any
> configuration changes on the SGE scheduler side? Any explanation regarding
> this will be really helpful.
You'll need to locate your drmaa library, it can be found wherever SGE
is installed. For example, if SGE is installed for 64-bit Linux in
/galaxy/sge, then the drmaa library should be located at:
Once you have the path, do the following (adjusting the value for the
path to libdrmaa.so.1.0 at your site):
Then in universe_wsgi.ini, set:
start_job_runners = drmaa
default_cluster_job_runner = drmaa:///
This should be all you need.
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and other Galaxy lists, please use the interface at: