Spunde, Alex wrote:
> Hi
> 
> Trying to install Galaxy on local machine, using hg:
> 
> hg clone http://bitbucket.org/galaxy/galaxy-dist
> 
>  
> 
> Get error messages for two eggs:
> 
>  
> 
> Scrambling the following eggs failed:
> 
>   docutils
> 
>   GeneTrack
> 
>  
> 
> Here is more details for docutils (practically same for GeneTrack):

Hi Alex,

The error is pretty odd - essentially, setup.py isn't being extracted
from the module source.  But first, is there a reason that the pre-built
eggs don't work?  You should be able to run 'python
./scripts/fetch_eggs.py' and get those, which would remove the need to
scramble them.

--nate

> 
>  
> 
> [aspunde@ilmnhw-biolin10 galaxy-dist]$ python scripts/scramble.py
> docutils
> 
> fetch_one(): Using existing source, remove to download again:
> 
>  
> /escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/archive
> s/docutils-0.7.tar.gz
> 
> unpack_source(): Removing old build directory at:
> 
>  
> /escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/build/p
> y2.6/docutils
> 
> unpack_source(): Unpacked to:
> 
>  
> /escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/build/p
> y2.6/docutils
> 
> copy_build_script(): Using build script
> /escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/scripts
> /generic.py
> 
> run_scramble_script(): Beginning build
> 
> run_scramble_script(): Executing in
> /escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/build/p
> y2.6/docutils:
> 
>   /escher/bioinfoHW/opensource/lib/bin/python scramble.py
> 
> Traceback (most recent call last):
> 
>   File "scramble.py", line 29, in <module>
> 
>     execfile( "setup.py", globals(), locals() )
> 
> IOError: [Errno 2] No such file or directory: 'setup.py'
> 
> Traceback (most recent call last):
> 
>   File "scripts/scramble.py", line 44, in <module>
> 
>     egg.scramble()
> 
>   File
> "/escher/bioinfoHW/opensource/Galaxy/galaxy-dist/lib/galaxy/eggs/scrambl
> e.py", line 57, in scramble
> 
>     self.run_scramble_script()
> 
>   File
> "/escher/bioinfoHW/opensource/Galaxy/galaxy-dist/lib/galaxy/eggs/scrambl
> e.py", line 206, in run_scramble_script
> 
>     raise ScrambleFailure( self, "%s(): Egg build failed for %s %s" % (
> sys._getframe().f_code.co_name, self.name, self.version ) )
> 
> galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build
> failed for docutils 0.7
> 
>  
> 
> Here is basic info about system:
> 
> [aspunde@ilmnhw-biolin10 galaxy-dist]$ python --version
> 
> Python 2.6
> 
> $ hg --version
> 
> Mercurial Distributed SCM (version 1.8.3)
> 
> $ uname -a
> 
> Linux ilmnhw-biolin10.hwus.illumina.com 2.6.18-164.15.1.el5 #1 SMP Wed
> Mar 17 11:30:06 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux
> 
>  
> 
> Thanks
> 
> Alex Spunde
> 

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