On Wed, May 4, 2011 at 9:59 AM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
> Hi all,
> I mentioned just over a month ago that I had written a Galaxy tool
> to do find Reciprocal Best Hits (RBH) from BLAST tabular output
> or similar (e.g. Bill Pearson's FASTA tabular output).
> http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-March/004799.html
> http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-April/004825.html
> http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-April/004829.html
> The only problem I had was setting default columns, which I
> consider to be a minor bug in Galaxy:
> https://bitbucket.org/galaxy/galaxy-central/issue/507
> Regardless of this small usability issue, would the Galaxy team
> like to add this tool to the main distribution (to sit along with my
> BLAST+ wrappers), or should I submit it to the tool shed?
> If you want to merge it, the following change set should suffice:
> https://bitbucket.org/peterjc/galaxy-central/changeset/198bf927ca30
> I made a subsequent change set to test giving column defaults
> as value="c2" rather than value="c2" which makes no difference,
> but if this is how default column values are meant to be given,
> take this change too:
> https://bitbucket.org/peterjc/galaxy-central/changeset/198bf927ca30

A third commit fixes a typo in the help:

Would the Galaxy team like to merge this tool into the trunk
(and if so, do you have any suggestions for improvements or
changes), or should I put it up on the Galaxy Tool Shed instead?


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