I am trying to configure galaxy with sge/drmaa scheduler. The galaxy process is 
starting up fine without any drmaa configuration. However the galaxy daemon 
doesn't start properly when I add drmaa configuration lines as shown below. I 
have set SGE_ROOT and DRMAA_LIBRARY_PATH variables properly. Am I missing 
something important here?


# drmaa configuration: 
{{{
start_job_runners = drmaa
default_cluster_job_runner = drmaa:///
}}


# paster.log file - with drmaa config the process dies with "Loaded job runner: 
galaxy.jobs.runners.local:LocalJobRunner" as last line in the log file. With 
local job runner the galaxy starts fine as shown below: 

{{{
galaxy.jobs DEBUG 2011-05-17 09:59:58,959 Loaded job runner: 
galaxy.jobs.runners.local:LocalJobRunner
galaxy.jobs INFO 2011-05-17 09:59:58,959 job manager started
galaxy.jobs INFO 2011-05-17 09:59:59,325 job stopper started
galaxy.sample_tracking.external_service_types DEBUG 2011-05-17 09:59:59,330 
Loaded external_service_type: Simple unknown sequencer 1.0.0
galaxy.sample_tracking.external_service_types DEBUG 2011-05-17 09:59:59,333 
Loaded external_service_type: Applied Biosystems SOLiD 1.0.0
galaxy.web.framework.base DEBUG 2011-05-17 09:59:59,349 Enabling 'mobile' 
controller, class: Mobile
galaxy.web.framework.base DEBUG 2011-05-17 09:59:59,417 Enabling 
'library_common' controller, class: LibraryCommon
galaxy.web.framework.base DEBUG 2011-05-17 09:59:59,435 Enabling 'admin' 
controller, class: AdminGalaxy
galaxy.web.framework.base DEBUG 2011-05-17 09:59:59,451 Enabling 'requests' 
controller, class: Requests
galaxy.web.framework.base DEBUG 2011-05-17 09:59:59,455 Enabling 
'external_services' controller, class: ExternalServiceController
galaxy.web.framework.base DEBUG 2011-05-17 09:59:59,474 Enabling 'page' 
controller, class: PageController
galaxy.web.framework.base DEBUG 2011-05-17 09:59:59,480 Enabling 
'visualization' controller, class: VisualizationController
galaxy.web.framework.base DEBUG 2011-05-17 09:59:59,549 Enabling 'tracks' 
controller, class: TracksController
galaxy.web.framework.base DEBUG 2011-05-17 09:59:59,550 Enabling 
'requests_common' controller, class: RequestsCommon
galaxy.web.framework.base DEBUG 2011-05-17 09:59:59,556 Enabling 'request_type' 
controller, class: RequestType
galaxy.web.framework.base DEBUG 2011-05-17 09:59:59,561 Enabling 
'external_service' controller, class: ExternalService
galaxy.web.framework.base DEBUG 2011-05-17 09:59:59,562 Enabling 'library' 
controller, class: Library
galaxy.web.framework.base DEBUG 2011-05-17 09:59:59,746 Enabling 'workflow' 
controller, class: WorkflowController
galaxy.web.framework.base DEBUG 2011-05-17 09:59:59,752 Enabling 
'library_admin' controller, class: LibraryAdmin
galaxy.web.framework.base DEBUG 2011-05-17 09:59:59,756 Enabling 'async' 
controller, class: ASync
galaxy.web.framework.base DEBUG 2011-05-17 10:00:00,026 Enabling 'history' 
controller, class: HistoryController
galaxy.web.framework.base DEBUG 2011-05-17 10:00:00,031 Enabling 'error' 
controller, class: Error
galaxy.web.framework.base DEBUG 2011-05-17 10:00:00,090 Enabling 
'requests_admin' controller, class: RequestsAdmin
galaxy.web.framework.base DEBUG 2011-05-17 10:00:00,095 Enabling 'ucsc_proxy' 
controller, class: UCSCProxy
galaxy.web.framework.base DEBUG 2011-05-17 10:00:00,104 Enabling 'forms' 
controller, class: Forms
galaxy.web.framework.base DEBUG 2011-05-17 10:00:00,137 Enabling 'dataset' 
controller, class: DatasetInterface
galaxy.web.framework.base DEBUG 2011-05-17 10:00:00,143 Enabling 'tool_runner' 
controller, class: ToolRunner
galaxy.web.framework.base DEBUG 2011-05-17 10:00:00,148 Enabling 'tag' 
controller, class: TagsController
galaxy.web.framework.base DEBUG 2011-05-17 10:00:00,158 Enabling 'user' 
controller, class: User
galaxy.web.framework.base DEBUG 2011-05-17 10:00:00,165 Enabling 'root' 
controller, class: RootController
galaxy.web.buildapp DEBUG 2011-05-17 10:00:00,189 Enabling 'httpexceptions' 
middleware
galaxy.web.buildapp DEBUG 2011-05-17 10:00:00,195 Enabling 'recursive' 
middleware
galaxy.web.buildapp DEBUG 2011-05-17 10:00:00,220 Enabling 'print debug' 
middleware
/share/apps/galaxy/shantanu-temp-workspace/galaxy-cluster-test/galaxy-dist-50e249442c5a/eggs/WebError-0.8a-py2.6.egg/weberror/exceptions/serial_number_generator.py:11:
 DeprecationWarning: the md5 module is deprecated; use hashlib instead
  import md5
galaxy.web.buildapp DEBUG 2011-05-17 10:00:00,726 Enabling 'eval exceptions' 
middleware
galaxy.web.buildapp DEBUG 2011-05-17 10:00:00,740 Enabling 'trans logger' 
middleware
galaxy.web.buildapp DEBUG 2011-05-17 10:00:00,740 Enabling 'config' middleware
galaxy.web.buildapp DEBUG 2011-05-17 10:00:00,744 Enabling 'x-forwarded-host' 
middleware
Starting server in PID 10170.
serving on 0.0.0.0:8081 view at http://127.0.0.1:8081

}}}


--
Thanks,
Shantanu.
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