Hi Peter,

I think the tool shed would be appropriate for this...

-K

On Tue, May 17, 2011 at 6:23 AM, Peter Cock <p.j.a.c...@googlemail.com>wrote:

> On Wed, May 4, 2011 at 9:59 AM, Peter Cock <p.j.a.c...@googlemail.com>
> wrote:
> > Hi all,
> >
> > I mentioned just over a month ago that I had written a Galaxy tool
> > to do find Reciprocal Best Hits (RBH) from BLAST tabular output
> > or similar (e.g. Bill Pearson's FASTA tabular output).
> >
> > http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-March/004799.html
> > http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-April/004825.html
> > http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-April/004829.html
> >
> > The only problem I had was setting default columns, which I
> > consider to be a minor bug in Galaxy:
> >
> > https://bitbucket.org/galaxy/galaxy-central/issue/507
> >
> > Regardless of this small usability issue, would the Galaxy team
> > like to add this tool to the main distribution (to sit along with my
> > BLAST+ wrappers), or should I submit it to the tool shed?
> >
> > If you want to merge it, the following change set should suffice:
> > https://bitbucket.org/peterjc/galaxy-central/changeset/198bf927ca30
> >
> > I made a subsequent change set to test giving column defaults
> > as value="c2" rather than value="c2" which makes no difference,
> > but if this is how default column values are meant to be given,
> > take this change too:
> > https://bitbucket.org/peterjc/galaxy-central/changeset/198bf927ca30
>
> A third commit fixes a typo in the help:
> https://bitbucket.org/peterjc/galaxy-central/changeset/2be6c0bc76ea
>
> Would the Galaxy team like to merge this tool into the trunk
> (and if so, do you have any suggestions for improvements or
> changes), or should I put it up on the Galaxy Tool Shed instead?
>
> Thanks,
>
> Peter
>
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/

Reply via email to