2011/5/23 Louise-Amélie Schmitt <louise-amelie.schm...@embl.de>: > @ Peter: I'm not sure I can get more precise... the checked attribute has no > effect whatsoever, the boxes are always unchecked when I open the tool. I > tried the "yes" and the "true" values to no avail. > > @ Leandro: Yes I already saw that ... > > But that's actually not the issue here. I just want my checkboxes to be > checked by default, and it appears not to work. > > To give an example, here is one of the lines of my tool XML file: > <param name="SQA" type="boolean" label="Run SolexaQA" checked="true" /> > This checkbox remains unchecked at tool opening. > > As far as I know, some people managed to get it working and I'd like to know > how. > > Any suggestion?
I think you've found a bug :( I found two working examples, "Filter out low complexity regions (with DUST)" parameter in tools/ncbi_blast_plus/ncbi_blastn_wrapper.xml and the scaffolding parameter in sr_assembly/velvetg.xml - however they are both within a conditional parameter section (only shown in advanced mode). Have a look at sr_mapping/bwa_color_wrapper.xml which has a "Suppress the header in the output SAM file" boolean which should be checked by default: <param name="suppressHeader" type="boolean" truevalue="true" falsevalue="false" checked="true" label="Suppress the header in the output SAM file" help="BWA produces SAM with several lines of header information" /> It's not working on http://usegalaxy.org - the box isn't checked. If you can verify that, please file an issue on bitbucket: https://bitbucket.org/galaxy/galaxy-central/issues/new Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/