I am wondering if galaxy tools directory structure can be changed so that tool 
configurations resides outside galaxy code base. Right now the galaxy code 
comes with some default/pre-installed tools in the $GALAXY_DIST/tools 
directory. Any additional tool configurations are also defined in the same 
directory. I think if we use a separate directory for additional tools then 
core galaxy code base can remain clean. This may help in updating the galaxy 
code as well. Any thoughts? 


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