2011/6/3 Louise-Amélie Schmitt <louise-amelie.schm...@embl.de>: > Hi > > I just blew everything up, I have no idea why. Galaxy doesn't start anymore. > When I run the run.sh script, it stops after loading the converters and just > crashes. Here's the traceback: > > Traceback (most recent call last): > File "/home/galaxy/galaxy-dev/lib/galaxy/web/buildapp.py", line 82, in > app_factory > app = UniverseApplication( global_conf = global_conf, **kwargs ) > File "/home/galaxy/galaxy-dev/lib/galaxy/app.py", line 52, in __init__ > load_history_imp_exp_tools( self.toolbox ) > File "/home/galaxy/galaxy-dev/lib/galaxy/tools/imp_exp/__init__.py", line > 34, in load_history_imp_exp_tools > history_exp_tool = toolbox.load_tool( tmp_name.name ) > File "/home/galaxy/galaxy-dev/lib/galaxy/tools/__init__.py", line 131, in > load_tool > tree = util.parse_xml( config_file ) > File "/home/galaxy/galaxy-dev/lib/galaxy/util/__init__.py", line 104, in > parse_xml > tree = ElementTree.parse(fname) > File > "/home/galaxy/galaxy-dev/eggs/elementtree-1.2.6_20050316-py2.6.egg/elementtree/ElementTree.py", > line 859, in parse > tree.parse(source, parser) > File > "/home/galaxy/galaxy-dev/eggs/elementtree-1.2.6_20050316-py2.6.egg/elementtree/ElementTree.py", > line 584, in parse > self._root = parser.close() > File > "/home/galaxy/galaxy-dev/eggs/elementtree-1.2.6_20050316-py2.6.egg/elementtree/ElementTree.py", > line 1251, in close > self._parser.Parse("", 1) # end of data > ExpatError: no element found: line 1, column 0 > Exception IOError: (28, 'No space left on device') in <bound method > _TemporaryFileWrapper.__del__ of <closed file '<fdopen>', mode 'w+b' at > 0x8539a50>> ignored > > Since the message is not really self-explanatory, I have no idea as to > what's gone wrong. The only thing I know is that the file referred by > tmp_name.name is empty. Do you have an idea where I should be looking? > > I really can't relate that to anything I did recently, I just modified some > parameter labels in two tools, which should be really harmless, and the > display name of a reference genome, which shouldn't make any difference > either.
The message looks self explanatory to me, 'No space left on device' means the disk is full. The fact that this is from a temporary file suggests it might not be the partition/disk where Galaxy is installed, but the system temp folder which is often a different partition. So check both, and also if you have any user disk quote in place, check that. Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/