Le 03/06/2011 15:19, Peter Cock a écrit :
2011/6/3 Louise-Amélie Schmitt<louise-amelie.schm...@embl.de>:
Hi

I just blew everything up, I have no idea why. Galaxy doesn't start anymore.
When I run the run.sh script, it stops after loading the converters and just
crashes. Here's the traceback:

Traceback (most recent call last):
  File "/home/galaxy/galaxy-dev/lib/galaxy/web/buildapp.py", line 82, in
app_factory
    app = UniverseApplication( global_conf = global_conf, **kwargs )
  File "/home/galaxy/galaxy-dev/lib/galaxy/app.py", line 52, in __init__
    load_history_imp_exp_tools( self.toolbox )
  File "/home/galaxy/galaxy-dev/lib/galaxy/tools/imp_exp/__init__.py", line
34, in load_history_imp_exp_tools
    history_exp_tool = toolbox.load_tool( tmp_name.name )
  File "/home/galaxy/galaxy-dev/lib/galaxy/tools/__init__.py", line 131, in
load_tool
    tree = util.parse_xml( config_file )
  File "/home/galaxy/galaxy-dev/lib/galaxy/util/__init__.py", line 104, in
parse_xml
    tree = ElementTree.parse(fname)
  File
"/home/galaxy/galaxy-dev/eggs/elementtree-1.2.6_20050316-py2.6.egg/elementtree/ElementTree.py",
line 859, in parse
    tree.parse(source, parser)
  File
"/home/galaxy/galaxy-dev/eggs/elementtree-1.2.6_20050316-py2.6.egg/elementtree/ElementTree.py",
line 584, in parse
    self._root = parser.close()
  File
"/home/galaxy/galaxy-dev/eggs/elementtree-1.2.6_20050316-py2.6.egg/elementtree/ElementTree.py",
line 1251, in close
    self._parser.Parse("", 1) # end of data
ExpatError: no element found: line 1, column 0
Exception IOError: (28, 'No space left on device') in<bound method
_TemporaryFileWrapper.__del__ of<closed file '<fdopen>', mode 'w+b' at
0x8539a50>>  ignored

Since the message is not really self-explanatory, I have no idea as to
what's gone wrong. The only thing I know is that the file referred by
tmp_name.name is empty. Do you have an idea where I should be looking?

I really can't relate that to anything I did recently, I just modified some
parameter labels in two tools, which should be really harmless, and the
display name of a reference genome, which shouldn't make any difference
either.
The message looks self explanatory to me, 'No space left on device'
means the disk is full. The fact that this is from a temporary file suggests
it might not be the partition/disk where Galaxy is installed, but the system
temp folder which is often a different partition. So check both, and also
if you have any user disk quote in place, check that.

Peter

Yes you're right, I kinda misread this part in the panic... Sorry for being an idiot again :)

Thanks a lot!
L-A
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