Le 03/06/2011 15:19, Peter Cock a écrit :
2011/6/3 Louise-Amélie Schmitt<louise-amelie.schm...@embl.de>:
I just blew everything up, I have no idea why. Galaxy doesn't start anymore.
When I run the run.sh script, it stops after loading the converters and just
crashes. Here's the traceback:
Traceback (most recent call last):
File "/home/galaxy/galaxy-dev/lib/galaxy/web/buildapp.py", line 82, in
app = UniverseApplication( global_conf = global_conf, **kwargs )
File "/home/galaxy/galaxy-dev/lib/galaxy/app.py", line 52, in __init__
load_history_imp_exp_tools( self.toolbox )
File "/home/galaxy/galaxy-dev/lib/galaxy/tools/imp_exp/__init__.py", line
34, in load_history_imp_exp_tools
history_exp_tool = toolbox.load_tool( tmp_name.name )
File "/home/galaxy/galaxy-dev/lib/galaxy/tools/__init__.py", line 131, in
tree = util.parse_xml( config_file )
File "/home/galaxy/galaxy-dev/lib/galaxy/util/__init__.py", line 104, in
tree = ElementTree.parse(fname)
line 859, in parse
line 584, in parse
self._root = parser.close()
line 1251, in close
self._parser.Parse("", 1) # end of data
ExpatError: no element found: line 1, column 0
Exception IOError: (28, 'No space left on device') in<bound method
_TemporaryFileWrapper.__del__ of<closed file '<fdopen>', mode 'w+b' at
Since the message is not really self-explanatory, I have no idea as to
what's gone wrong. The only thing I know is that the file referred by
tmp_name.name is empty. Do you have an idea where I should be looking?
I really can't relate that to anything I did recently, I just modified some
parameter labels in two tools, which should be really harmless, and the
display name of a reference genome, which shouldn't make any difference
The message looks self explanatory to me, 'No space left on device'
means the disk is full. The fact that this is from a temporary file suggests
it might not be the partition/disk where Galaxy is installed, but the system
temp folder which is often a different partition. So check both, and also
if you have any user disk quote in place, check that.
Yes you're right, I kinda misread this part in the panic... Sorry for
being an idiot again :)
Thanks a lot!
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at: