Joe,

Thanks very much for the example csv file.  I've fixed this issue in change set 
5668:81a5c317d909, which should be available in the distribution within the 
next few weeks.  If you don't want to wait, you can update from our development 
repo at https://bitbucket.org/galaxy/galaxy-central/wiki/Home.

Greg Von Kuster

On Jun 7, 2011, at 6:21 PM, Joe Cruz wrote:

> For my sample forms I have fields for Sample type, concentration, run type, 
> and read length.
> 
> I greatly appreciate your help Greg.  If you have any other questions let me 
> know.
> 
> Thanks,
> 
> Joe
> 
> On Tue, Jun 7, 2011 at 2:56 PM, Greg Von Kuster <g...@bx.psu.edu> wrote:
> Hello Joe,
> 
> Can you send me your csv file?
> 
> Thanks!
> 
> On Jun 7, 2011, at 10:45 AM, Joe Cruz wrote:
> 
>> Hello Everyone,
>> 
>> I wanted to ask if anyone has experience successfully importing sample 
>> information through a csv file.
>> 
>> I know there is an issue already created for csv file import, which I left a 
>> comment earlier:
>> 
>> https://bitbucket.org/galaxy/galaxy-central/issue/398/csv-import-of-sample-information-is-broken#comment-510683\
>> 
>> but my bug doesn't seem to deal with an 'Invalid Request ID' as the issue 
>> above states.
>> 
>> This is the error I get:
>> 
>> URL: 
>> http://localhost/requests_common/add_samples?cntrller=requests&id=a65cf3ca8eb85be3
>> File 
>> '/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py',
>>  line 143 in __call__
>>   app_iter = self.application(environ, start_response)
>> File 
>> '/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.py', 
>> line 98 in __call__
>>   environ, self.app)
>> File '/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py', 
>> line 539 in intercept_output
>>   app_iter = application(environ, replacement_start_response)
>> File 
>> '/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', 
>> line 80 in __call__
>>   return self.application(environ, start_response)
>> File 
>> '/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py',
>>  line 632 in __call__
>>   return self.application(environ, start_response)
>> File '/home/galaxy1/galaxy-dist/lib/galaxy/web/framework/base.py', line 145 
>> in __call__
>>   body = method( trans, **kwargs )
>> File '/home/galaxy1/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 
>> 84 in decorator
>>   return func( self, trans, *args, **kwargs )
>> File 
>> '/home/galaxy1/galaxy-dist/lib/galaxy/web/controllers/requests_common.py', 
>> line 829 in add_samples
>>   return self.__import_samples( trans, cntrller, request, 
>> displayable_sample_widgets, libraries, **kwd )
>> File 
>> '/home/galaxy1/galaxy-dist/lib/galaxy/web/controllers/requests_common.py', 
>> line 1109 in __import_samples
>>   sample_copy_select_field=sample_copy_select_field )
>> File '/home/galaxy1/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 
>> 650 in fill_template
>>   return self.fill_template_mako( filename, **kwargs )
>> File '/home/galaxy1/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 
>> 661 in fill_template_mako
>>   return template.render( **data )
>> File '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/template.py', 
>> line 133 in render
>>   return runtime._render(self, self.callable_, args, data)
>> File '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', 
>> line 364 in _render
>>   _render_context(template, callable_, context, *args, 
>> **_kwargs_for_callable(callable_, data))
>> File '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', 
>> line 381 in _render_context
>>   _exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
>> File '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', 
>> line 414 in _exec_template
>>   callable_(context, *args, **kwargs)
>> File '/home/galaxy1/galaxy-dist/database/compiled_templates/base.mako.py', 
>> line 40 in render_body
>>   __M_writer(unicode(next.body()))
>> File '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', 
>> line 255 in <lambda>
>>   return lambda *args, **kwargs:callable_(self.context, *args, **kwargs)
>> File 
>> '/home/galaxy1/galaxy-dist/database/compiled_templates/requests/common/add_samples.mako.py',
>>  line 164 in render_body
>>   __M_writer(unicode(render_samples_grid( cntrller, request, 
>> displayable_sample_widgets, action='edit_samples', adding_new_samples=True, 
>> encoded_selected_sample_ids=[], render_buttons=False, 
>> grid_header=grid_header )))
>> File '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', 
>> line 255 in <lambda>
>>   return lambda *args, **kwargs:callable_(self.context, *args, **kwargs)
>> File 
>> '/home/galaxy1/galaxy-dist/database/compiled_templates/requests/common/common.mako.py',
>>  line 749 in render_render_samples_grid
>>   sample_widget_history = sample_widget[ 'history' ]
>> KeyError: 'history'
>> 
>> I greatly appreciate your help and patience.
>> 
>> Thanks,
>> 
>> joe
>> ___________________________________________________________
>> Please keep all replies on the list by using "reply all"
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>> 
>>  http://lists.bx.psu.edu/
> 
> Greg Von Kuster
> Galaxy Development Team
> g...@bx.psu.edu
> 
> 
> 
> 
> <importSample.csv>

Greg Von Kuster
Galaxy Development Team
g...@bx.psu.edu



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