Hi all,
I just updated our development machine to the latest from galaxy-central,
and it broke:
$ ./run.sh
Traceback (most recent call last):
File "/home/pjcock/repositories/galaxy-central/lib/galaxy/web/buildapp.py",
line 81, in app_factory
from galaxy.app import UniverseApplication
File "/home/pjcock/repositories/galaxy-central/lib/galaxy/app.py",
line 11, in <module>
from galaxy.tools.imp_exp import load_history_imp_exp_tools
File
"/home/pjcock/repositories/galaxy-central/lib/galaxy/tools/imp_exp/__init__.py",
line 6, in <module>
from galaxy.web.base.controller import UsesHistory
File
"/home/pjcock/repositories/galaxy-central/lib/galaxy/web/base/controller.py",
line 12, in <module>
from galaxy.visualization.tracks.data_providers import get_data_provider
File
"/home/pjcock/repositories/galaxy-central/lib/galaxy/visualization/tracks/data_providers.py",
line 16, in <module>
from bx.arrays.array_tree import FileArrayTreeDict
File "numpy.pxd", line 119, in init bx.arrays.array_tree
(lib/bx/arrays/array_tree.c:11323)
ValueError: numpy.dtype does not appear to be the correct type object
I checked I had the latest numpy and bx_python egg files by removing them,
Galaxy downloaded the same ones:
bx_python-0.7.0_494c2d1d68b3-py2.6-linux-x86_64-ucs2.egg
numpy-1.6.0-py2.6-linux-x86_64-ucs2.egg
This is a 64 bit Linux machine. Any ideas what might be wrong? I'm guessing
some Pyrex or Cython extension module in an egg file needs recompiling.
Note there is a system level install of NumPy 1.4.1 on this machine, but
I believe the egg is used in preference?
Peter
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