Hey Greg,

Unfortunately after pulling your changeset I got a new error related to
'1_field_name'.  Here is the error traceback:


URL:
http://localhost:8080/requests_common/add_samples?cntrller=requests&id=f2db41e1fa331b3e
File
'/home/jcruz/galaxy-central/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py',
line 364 in respond
  app_iter = self.application(environ, detect_start_response)
File
'/home/jcruz/galaxy-central/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.py',
line 98 in __call__
  environ, self.app)
File '/home/jcruz/galaxy-central/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py',
line 539 in intercept_output
  app_iter = application(environ, replacement_start_response)
File
'/home/jcruz/galaxy-central/eggs/Paste-1.6-py2.6.egg/paste/recursive.py',
line 80 in __call__
  return self.application(environ, start_response)
File
'/home/jcruz/galaxy-central/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py',
line 632 in __call__
  return self.application(environ, start_response)
File '/home/jcruz/galaxy-central/lib/galaxy/web/framework/base.py', line 145
in __call__
  body = method( trans, **kwargs )
File '/home/jcruz/galaxy-central/lib/galaxy/web/framework/__init__.py', line
84 in decorator
  return func( self, trans, *args, **kwargs )
File
'/home/jcruz/galaxy-central/lib/galaxy/web/controllers/requests_common.py',
line 831 in add_samples
  return self.__import_samples( trans, cntrller, request,
displayable_sample_widgets, libraries, workflows, **kwd )
File
'/home/jcruz/galaxy-central/lib/galaxy/web/controllers/requests_common.py',
line 1163 in __import_samples
  sample_copy_select_field=sample_copy_select_field )
File '/home/jcruz/galaxy-central/lib/galaxy/web/framework/__init__.py', line
661 in fill_template
  return self.fill_template_mako( filename, **kwargs )
File '/home/jcruz/galaxy-central/lib/galaxy/web/framework/__init__.py', line
672 in fill_template_mako
  return template.render( **data )
File
'/home/jcruz/galaxy-central/eggs/Mako-0.2.5-py2.6.egg/mako/template.py',
line 133 in render
  return runtime._render(self, self.callable_, args, data)
File '/home/jcruz/galaxy-central/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py',
line 364 in _render
  _render_context(template, callable_, context, *args,
**_kwargs_for_callable(callable_, data))
File '/home/jcruz/galaxy-central/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py',
line 381 in _render_context
  _exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
File '/home/jcruz/galaxy-central/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py',
line 414 in _exec_template
  callable_(context, *args, **kwargs)
File '/home/jcruz/galaxy-central/database/compiled_templates/base.mako.py',
line 40 in render_body
  __M_writer(unicode(next.body()))
File '/home/jcruz/galaxy-central/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py',
line 255 in <lambda>
  return lambda *args, **kwargs:callable_(self.context, *args, **kwargs)
File
'/home/jcruz/galaxy-central/database/compiled_templates/requests/common/
add_samples.mako.py', line 176 in render_body
  __M_writer(unicode(render_request_type_sample_form_grids( grid_index,
grid_name, request.type.sample_form.grid_fields( grid_index ),
displayable_sample_widgets=displayable_sample_widgets,
show_saved_samples_read_only=True )))
File '/home/jcruz/galaxy-central/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py',
line 255 in <lambda>
  return lambda *args, **kwargs:callable_(self.context, *args, **kwargs)
File
'/home/jcruz/galaxy-central/database/compiled_templates/requests/common/
common.mako.py', line 120 in render_render_request_type_sample_form_grids
  __M_writer(unicode(render_sample_form( sample_index, sample['name'],
sample['field_values'], fields_dict, display_only )))
File
'/home/jcruz/galaxy-central/database/compiled_templates/requests/common/
common.mako.py', line 73 in render_sample_form
  return
render_render_sample_form(context,index,sample_name,sample_values,fields_dict,display_only)
File
'/home/jcruz/galaxy-central/database/compiled_templates/requests/common/
common.mako.py', line 186 in render_render_sample_form
  field_value = sample_values[ field_name ]
KeyError: '1_field_name'


Let me know if you need anything else.  Thanks again!

joe

On Wed, Jun 8, 2011 at 2:49 PM, Greg Von Kuster <g...@bx.psu.edu> wrote:

> Joe,
>
> Thanks very much for the example csv file.  I've fixed this issue in change
> set 5668:81a5c317d909, which should be available in the distribution within
> the next few weeks.  If you don't want to wait, you can update from our
> development repo at https://bitbucket.org/galaxy/galaxy-central/wiki/Home.
>
> Greg Von Kuster
>
> On Jun 7, 2011, at 6:21 PM, Joe Cruz wrote:
>
> For my sample forms I have fields for Sample type, concentration, run type,
> and read length.
>
> I greatly appreciate your help Greg.  If you have any other questions let
> me know.
>
> Thanks,
>
> Joe
>
> On Tue, Jun 7, 2011 at 2:56 PM, Greg Von Kuster <g...@bx.psu.edu> wrote:
>
>> Hello Joe,
>>
>> Can you send me your csv file?
>>
>> Thanks!
>>
>> On Jun 7, 2011, at 10:45 AM, Joe Cruz wrote:
>>
>> Hello Everyone,
>>
>> I wanted to ask if anyone has experience successfully importing sample
>> information through a csv file.
>>
>> I know there is an issue already created for csv file import, which I left
>> a comment earlier:
>>
>>
>> https://bitbucket.org/galaxy/galaxy-central/issue/398/csv-import-of-sample-information-is-broken#comment-510683
>> \
>>
>> but my bug doesn't seem to deal with an 'Invalid Request ID' as the issue
>> above states.
>>
>> This is the error I get:
>>
>> URL:
>> http://localhost/requests_common/add_samples?cntrller=requests&id=a65cf3ca8eb85be3
>> File
>> '/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py',
>> line 143 in __call__
>>   app_iter = self.application(environ, start_response)
>> File
>> '/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.py',
>> line 98 in __call__
>>   environ, self.app)
>> File
>> '/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py', line
>> 539 in intercept_output
>>   app_iter = application(environ, replacement_start_response)
>> File
>> '/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py',
>> line 80 in __call__
>>   return self.application(environ, start_response)
>> File
>> '/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py',
>> line 632 in __call__
>>   return self.application(environ, start_response)
>> File '/home/galaxy1/galaxy-dist/lib/galaxy/web/framework/base.py', line
>> 145 in __call__
>>   body = method( trans, **kwargs )
>> File '/home/galaxy1/galaxy-dist/lib/galaxy/web/framework/__init__.py',
>> line 84 in decorator
>>   return func( self, trans, *args, **kwargs )
>> File
>> '/home/galaxy1/galaxy-dist/lib/galaxy/web/controllers/requests_common.py',
>> line 829 in add_samples
>>   return self.__import_samples( trans, cntrller, request,
>> displayable_sample_widgets, libraries, **kwd )
>> File
>> '/home/galaxy1/galaxy-dist/lib/galaxy/web/controllers/requests_common.py',
>> line 1109 in __import_samples
>>   sample_copy_select_field=sample_copy_select_field )
>> File '/home/galaxy1/galaxy-dist/lib/galaxy/web/framework/__init__.py',
>> line 650 in fill_template
>>   return self.fill_template_mako( filename, **kwargs )
>> File '/home/galaxy1/galaxy-dist/lib/galaxy/web/framework/__init__.py',
>> line 661 in fill_template_mako
>>   return template.render( **data )
>> File
>> '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/template.py', line
>> 133 in render
>>   return runtime._render(self, self.callable_, args, data)
>> File
>> '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', line
>> 364 in _render
>>   _render_context(template, callable_, context, *args,
>> **_kwargs_for_callable(callable_, data))
>> File
>> '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', line
>> 381 in _render_context
>>   _exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
>> File
>> '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', line
>> 414 in _exec_template
>>   callable_(context, *args, **kwargs)
>> File '/home/galaxy1/galaxy-dist/database/compiled_templates/base.mako.py',
>> line 40 in render_body
>>   __M_writer(unicode(next.body()))
>> File
>> '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', line
>> 255 in <lambda>
>>   return lambda *args, **kwargs:callable_(self.context, *args, **kwargs)
>> File
>> '/home/galaxy1/galaxy-dist/database/compiled_templates/requests/common/
>> add_samples.mako.py', line 164 in render_body
>>   __M_writer(unicode(render_samples_grid( cntrller, request,
>> displayable_sample_widgets, action='edit_samples', adding_new_samples=True,
>> encoded_selected_sample_ids=[], render_buttons=False,
>> grid_header=grid_header )))
>> File
>> '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', line
>> 255 in <lambda>
>>   return lambda *args, **kwargs:callable_(self.context, *args, **kwargs)
>> File
>> '/home/galaxy1/galaxy-dist/database/compiled_templates/requests/common/
>> common.mako.py', line 749 in render_render_samples_grid
>>   sample_widget_history = sample_widget[ 'history' ]
>> KeyError: 'history'
>>
>> I greatly appreciate your help and patience.
>>
>> Thanks,
>>
>> joe
>> ___________________________________________________________
>> Please keep all replies on the list by using "reply all"
>> in your mail client.  To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>>
>>  http://lists.bx.psu.edu/
>>
>>
>>  Greg Von Kuster
>> Galaxy Development Team
>> g...@bx.psu.edu
>>
>>
>>
>>
> <importSample.csv>
>
>
> Greg Von Kuster
> Galaxy Development Team
> g...@bx.psu.edu
>
>
>
>
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