On Wed, Jun 15, 2011 at 2:30 AM, Ka Ming Nip <km...@bcgsc.ca> wrote: > Hello, > > I have been trying to set up Galaxy to run its jobs on my SGE > cluster using the Unified Method, based on the steps described > in the wiki: > > https://bitbucket.org/galaxy/galaxy-central/wiki/Config/Cluster > > My local instance of Galaxy is installed under my home directory, > but my cluster is on a different file system. I need to "ssh" to the > head node before I can submit jobs. > > Is there any way to set up Galaxy with a SGE cluster on a different > file system?
I haven't looked into it in great detail, but we currently have a similar network setup, and would also like to link Galaxy to SGE. The main problem is the lack of a shared file system - in order to run a job on the cluster we (Galaxy) has to get the data onto the cluster, run the job, and get the results back. Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/