Michael Steder wrote: > I'm just following the documentation here: > https://bitbucket.org/galaxy/galaxy-central/wiki/GetGalaxy > > And I ran into the following error: > > $ hg clone https://bitbucket.org/galaxy/galaxy-dist > $ cd galaxy-dist > $ sh run.sh > Fetch successful. > Traceback (most recent call last): > File "/Users/steder/GO/GoGalaxy/galaxy-dist/lib/galaxy/web/buildapp.py", > line 81, in app_factory > from galaxy.app import UniverseApplication > File "/Users/steder/GO/GoGalaxy/galaxy-dist/lib/galaxy/app.py", line 11, in > <module> > from galaxy.tools.imp_exp import load_history_imp_exp_tools > File > "/Users/steder/GO/GoGalaxy/galaxy-dist/lib/galaxy/tools/imp_exp/__init__.py", > line 6, in <module> > from galaxy.web.base.controller import UsesHistory > File > "/Users/steder/GO/GoGalaxy/galaxy-dist/lib/galaxy/web/base/controller.py", > line 12, in <module> > from galaxy.visualization.tracks.data_providers import get_data_provider > File > "/Users/steder/GO/GoGalaxy/galaxy-dist/lib/galaxy/visualization/tracks/data_providers.py", > line 16, in <module> > from bx.arrays.array_tree import FileArrayTreeDict > File "numpy.pxd", line 119, in init bx.arrays.array_tree > (lib/bx/arrays/array_tree.c:11323) > ValueError: numpy.dtype does not appear to be the correct type object > > I was able to run the previous stable version of Galaxy. Is there something > I can do to get galaxy-dist running?
Hi Mike, I'm moving this over to galaxy-dev since it deals with a local installation. It should be working, this would have been a problem for a short time using galaxy-central, but should not have affected -dist. Could you send the output of: python ./scripts/get_platforms.py python -V > > Should I be running galaxy-central instead? No, galaxy-dist is fine (and should be less prone to issues due to cloning/updating at the wrong moment). Thanks, --nate > > ~Mike > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/