On Wed, Jun 15, 2011 at 4:56 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote: > Hi Dan, > > I just started work on updating my MIRA wrapper, and fell over a > regression present of 6079:5e6254f2b9e3, steps to reproduce on Linux:- > > 1. Install latest Galaxy > 2. Install my MIRA wrapper v0.0.1 from the tool shed (don't need MIRA for > this) > 3. Run Galaxy > 4. Select the MIRA tool > 5. Change "Backbones/reference chromosomes?" or > "Sanger/Capillary reads?" or "454 reads?" or > "Solexa/Illumina reads?" to yes > 6. Instead of new file parameter appearing, get a KeyError: > '__current_case__' exception (details below). > > Shorter example without a 3rd party tool: > > 1. Install latest Galaxy > 2. Run Galaxy > 3. Select the "Convert SOLiD output to fastq" tool > 4. Change "Is this a mate-pair run?" to yes > 5. Instead of new file parameters appearing, get a KeyError: > '__current_case__' exception. > > By going through recent commits and retesting, I found the commit > which caused this regression: > > changeset: 6078:894112e0b9d5 > user: Daniel Blankenberg <d...@bx.psu.edu> > date: Thu Jun 09 11:26:41 2011 -0400 > summary: Some fixes for interplay between DataToolParameter, > implicit datatype conversion and dynamic select > lists. Closes #491. > > I guess there are downsides to running my development environment off > galaxy-central rather than galaxy-dist ... > > Peter
This has been fixed as of 6116:124f8bcea0ff but I didn't bother to work out which change solved it. Regards, Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
