This has been reported before as well, but should be fixed without having to
rescramble when we release our next dist-release soon.
On Wed, Jun 22, 2011 at 12:47 AM, Ira Cooke <i.co...@latrobe.edu.au> wrote:
> I recently downloaded galaxy and had some problems installing it on my
> machine (running Mac OSX 10.6.7 ). I've found a workaround to my problem,
> but I thought I should post here in case it is useful.
> I obtained the standard galaxy distribution using
> hg clone https://bitbucket.org/galaxy/galaxy-dist/
> I then tried running sh run.sh but got;
> Traceback (most recent call last):
> File "/Users/iracooke/Sources/galaxy-dist/lib/galaxy/web/buildapp.py",
> line 81, in app_factory
> from galaxy.app import UniverseApplication
> File "/Users/iracooke/Sources/galaxy-dist/lib/galaxy/app.py", line 11, in
> from galaxy.tools.imp_exp import load_history_imp_exp_tools
> line 6, in <module>
> from galaxy.web.base.controller import UsesHistory
> line 12, in <module>
> from galaxy.visualization.tracks.data_providers import get_data_provider
> line 16, in <module>
> from bx.arrays.array_tree import FileArrayTreeDict
> File "numpy.pxd", line 119, in init bx.arrays.array_tree
> ValueError: numpy.dtype does not appear to be the correct type object
> I googled this error and found a post suggesting that I try virtualenv ...
> I tried that but it made no difference.
> Python --version returns
> After some digging I tried rescrambling the numpy and then the bx_python
> egg. After rescrambling the latter sh run.sh worked.
> Anyway I'm not sure if other mac users have had similar problems. In my
> case I'm pretty sure I had installed things with easy_install in the past
> ...but I assume using virtualenv would have solved that problem.
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