Hi Aaron,

On 07/06/2011 04:45 PM, Zschunke, Aaron M. wrote:

> Is there any way to convert a certain section of a bam file to fastq
> using the galaxy tools? I just want to convert a certain part of the
> genome. Thanks. 

there is the bam_to_fastq tool on the toolshed
(http://toolshed.g2.bx.psu.edu/) in the SAM subsection.


Dr. Holger Klein
Core Facility Bioinformatics
Institute of Molecular Biology gGmbH (IMB)
Tel: +49(6131) 39 21511
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