Much thanks for your input.
On 07/13/2011 02:31 PM, Bossers, Alex wrote:
as far as the xml goes. Yes it usually is accompanied by a py perl or bash
script. However you could extract at least the user configurable options to
gather input/output and setting parameters from the definition in the xml.
Well, I'm just afraid that in too many occations, the input param flags
and order for the accompanying (py/sh/perl) script might not be
identical to the command line tool itself (or do the toolconfig
generally avoid changing the flags and their order?).
System Expert / Bioinformatician
SNIC-UPPMAX / SciLifeLab Uppsala
Uppsala University, Sweden
Phone: +46 (0)18 - 471 1060
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