Hi Gordon,
Very nice! Do you think it would be helpful to add this into the Tool
Shed for sharing? I didn't see it there, so apologies if you already added!
Best,
Jen
Galaxy team
On 7/19/11 11:45 AM, Assaf Gordon wrote:
Hi all,
I got around to writing the report I always needed: how much time each job
actually runs and how much time it spends waiting in the SGE queue.
The attached shell script produces the report, combining information from SGE's
QACCT with the galaxy job/dataset information.
The output contains:
job, user, tool name, dbkey, total input size in bytes, waiting time in SGE
queue, actual SGE executiong running time, and some other tidbits.
This allows finding how much running time each user had on the cluster,
how much time each tool/user spend idly waiting,
and some possible correlations between tools, dbkeys, input size and running
time.
The script is tightly coupled with SGE and PostgreSQL, but can probably be
adapted to PBS/MySQL.
Hope this helps someone,
-gordon
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Jennifer Jackson
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http://galaxyproject.org/
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