Jennifer Jackson wrote, On 07/19/2011 05:04 PM:
> 
> Do you think it would be helpful to add this into the Tool
> Shed for sharing? I didn't see it there, so apologies if you already
> added!

It's not a galaxy tool per-se, are you sure you want to start a "galaxy admin" 
section in the toolshed ?


> 
> Best,
> 
> Jen Galaxy team
> 
> 
> On 7/19/11 11:45 AM, Assaf Gordon wrote:
>> Hi all,
>> 
>> I got around to writing the report I always needed: how much time
>> each job actually runs and how much time it spends waiting in the
>> SGE queue.
>> 
>> The attached shell script produces the report, combining
>> information from SGE's QACCT with the galaxy job/dataset
>> information.
>> 
>> The output contains: job, user, tool name, dbkey, total input size
>> in bytes, waiting time in SGE queue, actual SGE executiong running
>> time, and some other tidbits.
>> 
>> This allows finding how much running time each user had on the
>> cluster, how much time each tool/user spend idly waiting, and some
>> possible correlations between tools, dbkeys, input size and running
>> time.
>> 
>> The script is tightly coupled with SGE and PostgreSQL, but can
>> probably be adapted to PBS/MySQL.
>> 
>> Hope this helps someone, -gordon
>> 
>> 
>> 
>> 
>> ___________________________________________________________ Please
>> keep all replies on the list by using "reply all" in your mail
>> client.  To manage your subscriptions to this and other Galaxy
>> lists, please use the interface at:
>> 
>> http://lists.bx.psu.edu/
> 

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/

Reply via email to