We are using environment modules ( http://modules.sourceforge.net/ ) on the
cluster and took same approach for the galaxy install. The module files are
loaded using .bashrc file of galaxy user. It's also useful for non-galaxy
users/admins for running galaxy-tools from command-line by simply loading
required module files in their shell environment.
On Jul 20, 2011, at 10:28 AM, michael burrell (TSL) wrote:
> Good afternoon,
> More of a general discussion point, where is the best place to put the
> environmental variable declarations within galaxy.
> To date I have been placing them as exports in the run.sh, though I can not
> help but wonder if there is a better place, which is appropriate whatever
> method you use to kick off galaxy.
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Please keep all replies on the list by using "reply all"
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