Hello Assaf,

I've added this to the ~/contrib directory in change set 5820:c609c2574c66.  
Thanks very much for contributing this.

Greg Von Kuster

On Jul 19, 2011, at 2:45 PM, Assaf Gordon wrote:

> Hi all,
> 
> I got around to writing the report I always needed: how much time each job 
> actually runs and how much time it spends waiting in the SGE queue.
> 
> The attached shell script produces the report, combining information from 
> SGE's QACCT with the galaxy job/dataset information.
> 
> The output contains: 
> job, user, tool name, dbkey, total input size in bytes, waiting time in SGE 
> queue, actual SGE executiong running time, and some other tidbits.
> 
> This allows finding how much running time each user had on the cluster,
> how much time each tool/user spend idly waiting,
> and some possible correlations between tools, dbkeys, input size and running 
> time.
> 
> The script is tightly coupled with SGE and PostgreSQL, but can probably be 
> adapted to PBS/MySQL.
> 
> Hope this helps someone,
> -gordon
> 
> <collect_sge_job_timings.sh>___________________________________________________________
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Greg Von Kuster
Galaxy Development Team
g...@bx.psu.edu




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