We have configured galaxy to work with our SGE cluster using drmaa job runner 
interface. We are using 'unified method' for this install and 
both TEMP environment variable and new_file_path in universe_wsgi.ini file have 
been configured correctly. However, we are seeing some errors where local /tmp 
space on compute nodes is being referenced by the galaxy tools. Specifically we 
saw it mentioned in error messages from following tools: 
 * bwa_wrapper and upload tools: 'No space left on device: /tmp...' 
 * sam_to_bam tool: 'Error sorting alignments from /tmp/filename..'

Shouldn't it be referencing TEMP environment variable or new_file_path 
configuration value? Is it getting overridden by TMP or TMPDIR variables in 
python wrapper code? Has anyone else experienced similar issue? 

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