I am still working on the patch to submit jobs as the actual user under SGE . I 
have it working for the default case but it fails for the case of 
set_metadata_externally = TRUE.  Can someone point me to where the metadata 
files are created so that I can change the permissions for those files?

Also, I have to addusers to the galaxy group in order for this to work because 
the galaxy_*.sh scripts are created as executable only by members of the galaxy 
group. I want to change this so that all users can execute these scripts. Any 
help on where in the code these scripts are created?

Upon completion I will create a galaxy central fork and upload my changes to it.



Ilya Chorny Ph.D.
Bioinformatics - Intern

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