On Tue, Jul 26, 2011 at 8:16 PM, Luobin Yang <yangl...@isu.edu> wrote:
> I benchmarked MrBayes 3.1.2 program on my cluster for two cases:
> 1. use local /tmp for temporary files
> 2. use the network shared /home/galaxy/galaxy-dist/database/tmp
> MrBayes is about 10 times slower for case 2 than for case 1.  What I did was
> to set the network shared folder as the default but in the MrBayes wrapper,
> I changed the environment variable TEMP to be a local folder.
> Luobin

Does that mean Galaxy will configure the TEMP environment variable for
tools to point at the universe_wsgi.ini new_file_path setting? In your case,

This is the kind of thing I think should be documented somewhere for
tool authors.



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