On Tue, Jul 26, 2011 at 8:16 PM, Luobin Yang <yangl...@isu.edu> wrote:
> I benchmarked MrBayes 3.1.2 program on my cluster for two cases:
> 1. use local /tmp for temporary files
> 2. use the network shared /home/galaxy/galaxy-dist/database/tmp
> MrBayes is about 10 times slower for case 2 than for case 1.  What I did was
> to set the network shared folder as the default but in the MrBayes wrapper,
> I changed the environment variable TEMP to be a local folder.
> Luobin

Does that mean Galaxy will configure the TEMP environment variable for
tools to point at the universe_wsgi.ini new_file_path setting? In your case,
/home/galaxy/galaxy-dist/database/tmp

This is the kind of thing I think should be documented somewhere for
tool authors.

Thanks

Peter

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/

Reply via email to