I  made some changes to the cufflinks wrapper.  I added the -g/--GTF-guide use 
reference transcript annotation to guide assembly as an option. The version 
number needs to still be updated in my commit.


https://bitbucket.org/ichorny/galaxy-central/changeset/fc5e24d453e5

Ilya Chorny Ph.D.
Bioinformatics - Intern
icho...@illumina.com<mailto:icho...@illumina.com>
858-202-4582

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