Hi, I've noticed a bug in sam2interval.py.
There are a few indentation errors in the final lines of code. I think
there should be an indent after:
if not ref_name == '*':
And this whole if statement should be included in the for loop above.
Also, would you be able to add read_name to the truncated output (when
not printing all fields). This makes downstream analysis a lot easier,
e.g. looking at reads that map multiple times.
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