> Actual result: Red error against the gff file,
> Unspecified genome build, click the pencil icon in the history item to
> set the genome build
> The fact I'm using a FASTA file from my history should mean the genome
> build is irrelevant as that only applies to "locally cached genomes"
> (right?).

Correct. Fixed in galaxy-central changeset 07de40a5a0b9

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