On Fri, Aug 12, 2011 at 2:25 PM, Jeremy Goecks <jeremy.goe...@emory.edu> wrote: >> Actual result: Red error against the gff file, >> Unspecified genome build, click the pencil icon in the history item to >> set the genome build >> >> The fact I'm using a FASTA file from my history should mean the genome >> build is irrelevant as that only applies to "locally cached genomes" >> (right?). > > Correct. Fixed in galaxy-central changeset 07de40a5a0b9 > > Thanks, > J.
Great. Could you try that example on the latest galaxy-central please? I have revision 06f0bca6de24 and get the following error using the steps given earlier: Traceback (most recent call last): File "/home/pjcock/repositories/galaxy-central/tools/extract/extract_genomic_dna.py", line 261, in if __name__ == "__main__": __main__() File "/home/pjcock/repositories/galaxy-central/tools/extract/extract_genomic_dna.py", line 128, in __main__ chrom = feature.chrom AttributeError: 'Header' object has no attribute 'chrom' Thanks, Peter P.S. Perhaps you could apply this fix before tacking the above issue? http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-August/006366.html That would save me having to merge it after the trunk changes. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/