> Well, sort of. After converting that GFF3 file into BED, the strand column > isn't set in the metadata. That seems important!
We'll look into this. > Also a point of clarification, I had the wrong URL for the FASTA file. > > This is the whole genome, although to actually proceed with this > example, the sequence must be renamed to just NC_005213.1 > rather than the NCBI's gi|38349555|ref|NC_005213.1| in order > to match the naming in the GFF file. > ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Nanoarchaeum_equitans_Kin4_M_uid58009/NC_005213.fna Correct. J. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/