> Well, sort of. After converting that GFF3 file into BED, the strand column
> isn't set in the metadata. That seems important!

We'll look into this.

> Also a point of clarification, I had the wrong URL for the FASTA file.
> This is the whole genome, although to actually proceed with this
> example, the sequence must be renamed to just NC_005213.1
> rather than the NCBI's gi|38349555|ref|NC_005213.1| in order
> to match the naming in the GFF file.
> ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Nanoarchaeum_equitans_Kin4_M_uid58009/NC_005213.fna


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