Hi Chris,

Take a look at this file :
lib/galaxy/jobs/runners/drmaa.py
in your galaxy directory.

You can export a path for binaries here. For example :
export PATH=$PATH:/opt/bin/
before export PYTHONPATH


Moreover, do not forget other path values in your service script or in your
galaxy user profile.

Hope this help.



2011/8/23 Roman Valls <brainst...@nopcode.org>

> Did you adjust the SGE_ROOT environment variable to point to the
> libdrmaa for SGE (probably /opt/sge_62u5_gr/bin/lx24-amd64) ?
>
> This is of course just a guess, could you please provide some error
> messages/logs ?
>
> Cheers,
> Roman
>
> On 2011-08-23 10:20, Chris Cole wrote:
> > BUMP
> >
> > Does anyone have any idea on this? Our Galaxy is currently out of action
> > until this is sorted.
> > Thanks,
> >
> > Chris
> >
> > On 22/08/11 10:08, Chris Cole wrote:
> >> Hi,
> >>
> >> Following a recent update to our SGE, DRMAA is failing to load in
> >> galaxy. The reason being that the path has changed. How do I change the
> >> path for galaxy to find the libdrmaa module?
> >> Cheers,
> >>
> >> Chris
> >>
> >>
> >
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