Chorny, Ilya wrote: > I get these two error in the log file. The job finishes correctly and a > metadata file is created but I still get the error. Can anyone provide me > with more detail about what this error means? The second error is incorrect > because the files were deleted. > > > setting metadata externally failed for HistoryDatasetAssociation 344: [Errno > 1] Operation not permitted: '/mnt/data/galaxy/database/files/000' > and > > Failed to cleanup MetadataTempFile temp files from > ../../mnt/data/galaxy/database/tmp/metadata_out_HistoryDatasetAssociation_344_NUDu3A: > No JSON object could be decoded: line 1 column 0 (char 0)
Hi Ilya, The problem is somewhere in scripts/set_metadata.py. If you 'raise' the exception on line 84 of this script rather than writing it to the metadata results file, you should see a full traceback that reveals the source of the error. --nate > > > Ilya Chorny Ph.D. > Bioinformatics Scientist I > Illumina, Inc. > 9885 Towne Centre Drive > San Diego, CA 92121 > Work: 858.202.4582 > Email: icho...@illumina.com<mailto:icho...@illumina.com> > Website: www.illumina.com<http://www.illumina.com> > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
