IT Support wrote:
> Greetings,
>
> I attempted to install Galaxy on a ROCKS 5.3 cluster. I checked out Galaxy to
> a location commonly accessible by all analysis nodes. I then set the path to
> Python 2.7 like so:
>
> export PATH=/opt/galaxy-python/python:$PATH
>
> However, executing run.sh gives me the error at the end of this message. The
> strange thing is that Galaxy runs fine on a CentOS 5.6 virtual machine.
>
> Any help would be much appreciated. Thanks!
Hi,
It looks despite adjusting $PATH, you're still getting Python 2.4.
$PATH should point to the directory which contains the `python` binary,
could this be:
/opt/galaxy-python/python/bin ?
--nate
>
> -----
>
> Traceback (most recent call last):
> File "./scripts/paster.py", line 34, in ?
> command.run()
> File
> "/opt/galaxy-dist/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/command.py",
> line 84, in run
> invoke(command, command_name, options, args[1:])
> File
> "/opt/galaxy-dist/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/command.py",
> line 123, in invoke
> exit_code = runner.run(args)
> File
> "/opt/galaxy-dist/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/command.py",
> line 218, in run
> result = self.command()
> File
> "/opt/galaxy-dist/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/serve.py",
> line 276, in command
> relative_to=base, global_conf=vars)
> File
> "/opt/galaxy-dist/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/serve.py",
> line 311, in loadapp
> return loadapp(
> File
> "/opt/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.4.egg/paste/deploy/loadwsgi.py",
> line 204, in loadapp
> return loadobj(APP, uri, name=name, **kw)
> File
> "/opt/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.4.egg/paste/deploy/loadwsgi.py",
> line 225, in loadobj
> return context.create()
> File
> "/opt/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.4.egg/paste/deploy/loadwsgi.py",
> line 625, in create
> return self.object_type.invoke(self)
> File
> "/opt/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.4.egg/paste/deploy/loadwsgi.py",
> line 110, in invoke
> return fix_call(context.object, context.global_conf, **context.local_conf)
> File
> "/opt/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.4.egg/paste/deploy/util/fixtypeerror.py",
> line 57, in fix_call
> val = callable(*args, **kw)
> File "/opt/galaxy-dist/lib/galaxy/web/buildapp.py", line 90, in app_factory
> add_controllers( webapp, app )
> File "/opt/galaxy-dist/lib/galaxy/web/buildapp.py", line 39, in
> add_controllers
> module = __import__( module_name )
> File "/opt/galaxy-dist/lib/galaxy/web/controllers/admin.py", line 310
> link=( lambda item: (dict( operation="Manage users and groups",
> id=item.id, webapp="galaxy" ) if not item.default else dict(
> operation="Change amount", id=item.id, webapp="galaxy" )) ),
>
> -----
>
>
>
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