> What, like a BAM file of unaligned reads? Uses gzip compression, and > tracks the pairing information explicitly :) Some tools will already take > this as an input format, but not all.
ah, yes, precisely. i actually think illumina's pipeline produces files in this format now. wrappers which create a temporary fastq file would need to be created but that's easy enough. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/