FWIW, the XSQ format files created by the 5500 Series ABI SOLiD are
HDF5, but not BioHDF:
Probably not, as it is somewhat a competitor of SAM/BAM (a bit broader in
scope, beyond just alignments). As Peter indicated, I know the BioHDF folks
(they are here in town); however, my actual question was whether anyone is
actually using HDF5 or SRA in production? I haven't seen adoption beyond
PacBio, but I have seen some things popping up in Galaxy.
Bioinformatics Support Specialist
Alberta Children's Hospital Research Institute
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