Hi All , i am working in galaxy tool . i want to add one visualization tools in galaxy . i don't understand how the display applications works . tag ox xml file is not clear for display application .
can u just explain the meaning of type="template" tag , target_frame tag , & tag ,BASE URL , strip tag and viewable tag in this xml? <display id="genetrack_interval" version="1.0.0" name="view in"> <link id="genetrack" name="GeneTrack"> <url target_frame="galaxy_main">http://genetrack.g2.bx.psu.edu/galaxy?filename=${encoded_filename.qp}&hashkey=${hash_key.qp}&input=${qp(str($genetrack_file.id))}&GALAXY_URL=${galaxy_url.qp}</url> <param type="data" name="bed_file" viewable="False" format="bed6,genetrack"/> <!-- for now, we'll explicitly take care of the multi-step conversion; walk genetrack datatype down as a conversion of genetrack to genetrack doesn't exist and would likely be pointless --> <param type="data" dataset="bed_file" name="genetrack_file" format="genetrack" viewable="False" /> <param type="template" name="galaxy_url" strip="True" > ${BASE_URL}/tool_runner?tool_id=predict2genetrack </param> <param type="template" name="hash_key" strip="True" > #from galaxy.util.hash_util import hmac_new ${hmac_new( $APP.config.tool_secret, $genetrack_file.file_name )} </param> <param type="template" name="encoded_filename" strip="True" > #import binascii ${binascii.hexlify( $genetrack_file.file_name )} </param> </link> </display> Regards shashi shekhar ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/