Hi all,

  Thanks for reply .   I have an  application  to visualize some
custom datatyes inputs . i want to integrate this application  with
galaxy . i have already added datatypes in my local instance of
Galaxy . Is It  required  to modify my  application  ?


Regards
shashi


On Tue, Sep 6, 2011 at 6:42 PM, Daniel Blankenberg <d...@bx.psu.edu> wrote:
> Hi Shashi,
>
> The docs for external display application could use some enhancement, but I 
> have provided details on the features you are asking about below.
>
> target_frame: this is the frame where you want this external display 
> application to appear.
>
> type="template": this parameter type is a cheetah template; like <command> 
> and <configfile> tags in tools
>
> viewable="False": is this parameter viewable over http/s? When set to false, 
> you will be able to access and use the parameter in the generation of the 
> display applications, but it will not be accessible over the web via a URL. 
> GeneTrack accesses files directly over the filesystem, so the files do not 
> need to be web accessible for the display application.
>
>
> Thanks for using Galaxy,
>
> Dan
>
>
>
> On Sep 6, 2011, at 6:03 AM, shashi shekhar wrote:
>
>> Hi All.,
>>
>> I need help in understanding the xml tag for display_application. i
>> don't know how all these xml tags works . can u provide me links for
>> understanding those tags like
>>
>> target_frame
>>
>> type="template"
>>
>> viewable="False
>>
>>
>> <display id="genetrack_interval" version="1.0.0" name="view in">
>>    <link id="genetrack" name="GeneTrack">
>>        <url 
>> target_frame="galaxy_main">http://genetrack.g2.bx.psu.edu/galaxy?filename=${encoded_filename.qp}&amp;hashkey=${hash_key.qp}&amp;input=${qp(str($genetrack_file.id))}&amp;GALAXY_URL=${galaxy_url.qp}</url>
>>        <param type="data" name="bed_file" viewable="False"
>> format="bed6,genetrack"/> <!-- for now, we'll explicitly take care of
>> the multi-step conversion; walk genetrack datatype down as a
>> conversion of genetrack to genetrack doesn't exist and would likely be
>> pointless -->
>>        <param type="data" dataset="bed_file" name="genetrack_file"
>> format="genetrack" viewable="False" />
>>        <param type="template" name="galaxy_url" strip="True" >
>>            ${BASE_URL}/tool_runner?tool_id=predict2genetrack
>>        </param>
>>        <param type="template" name="hash_key" strip="True" >
>>            #from galaxy.util.hash_util import hmac_new
>>            ${hmac_new( $APP.config.tool_secret, $genetrack_file.file_name )}
>>        </param>
>>        <param type="template" name="encoded_filename" strip="True" >
>>            #import binascii
>>            ${binascii.hexlify( $genetrack_file.file_name )}
>>        </param>
>>    </link>
>> </display>
>>
>>
>>
>>
>>
>> Regards
>> shashi shekhar
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>

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