Whyte, Jeffrey wrote:
> Nate,
> 
> For some reason, ~/galaxy-dist wasn't in my PATH.  Here is the output when 
> the script is run from the ~/galaxy-dist directory:
> 
> [~/galaxy-dist] myuserid 03:50 PM > python ./scripts/get_platforms.py
> macosx-10.6-intel-ucs2
> [~/galaxy-dist] myuserid 03:50 PM > 
> 
> Looks like it is set for Mac OS X 10.6 Snow Leopard instead of 10.7 Lion.  (?)

This is normal since OS X has binary compatibility with older releases,
the Python distributors build for an older platform rather than each
individual platform.

I see there's now an Intel-only build for 10.6+, I'll work on this ASAP.

> 
> Thanks,
> Jeff 
> 
> 
> On Sep 6, 2011, at 10:18 AM, Nate Coraor wrote:
> 
> > Whyte, Jeffrey wrote:
> >> Thanks for the information, Nate.
> >> 
> >> I installed Python as you described, and the error I get now is pasted 
> >> below.  I appreciate your help.
> >> 
> >> Jeff
> >> 
> >> [~/galaxy-dist] myuserid 03:06 PM > ./run.sh
> >> Some eggs are out of date, attempting to fetch...
> >> Warning: MarkupSafe (a dependent egg of Mako) cannot be fetched
> >> Warning: simplejson (a dependent egg of WebHelpers) cannot be fetched
> >> pysam 0.4.2 couldn't be downloaded automatically.  You can try
> >> building it by hand with:
> >>  python scripts/scramble.py -e pysam
> >> Fetch failed.
> >> [~/galaxy-dist] myuserid 03:06 PM >
> > 
> > Could you report back with the output of:
> > 
> >    % python ./scripts/get_platforms.py
> > 
> > ?
> > 
> > Thanks,
> > --nate
> > 
> >> ________________________________________
> >> From: Nate Coraor [n...@bx.psu.edu]
> >> Sent: Friday, September 02, 2011 1:16 PM
> >> To: Whyte, Jeffrey
> >> Cc: galaxy-dev@lists.bx.psu.edu
> >> Subject: Re: [galaxy-dev] Galaxy egg fetching error? Mac OS X 10.7 (Lion)
> >> 
> >> Whyte, Jeffrey wrote:
> >>> Hi,
> >>> 
> >>> I've been having trouble running a local instance of Galaxy on a Mac Pro 
> >>> after upgrading to OS X 10.7 (Lion).  My Python version is 2.7.1 and 
> >>> Mercurial is 1.9.1 for MacOS X 10.7.  I don't have any MacPorts installed.
> >>> 
> >>> The error I see after running the startup script is pasted at the end of 
> >>> this message.  Thanks in advance for any help or advice.
> >>> jjw
> >> 
> >> Hi Jeffrey,
> >> 
> >> We haven't yet gotten our dependencies up to speed on Lion.  Could you
> >> grab a copy of Python from python.org and use this?  It'll install under
> >> /Library/Frameworks/Python.framework, just add the correct bin/
> >> directory to the front of your $PATH and start Galaxy as normal.
> >> 
> >> Sorry for the inconvenience,
> >> --nate
> >> 
> >>> 
> >>> -----
> >>> 
> >>> [~/galaxy-dist] myuserid 10:11 AM > ./run.sh
> >>> Some eggs are out of date, attempting to fetch...
> >>> Warning: MarkupSafe (a dependent egg of Mako) cannot be fetched
> >>> Warning: decorator (a dependent egg of sqlalchemy-migrate) cannot be 
> >>> fetched
> >>> Warning: simplejson (a dependent egg of WebHelpers) cannot be fetched
> >>> Traceback (most recent call last):
> >>> File "./scripts/fetch_eggs.py", line 30, in <module>
> >>>   c.resolve() # Only fetch eggs required by the config
> >>> File "/Users/myuserid/galaxy-dist/lib/galaxy/eggs/__init__.py", line 345, 
> >>> in resolve
> >>>   egg.resolve()
> >>> File "/Users/myuserid/galaxy-dist/lib/galaxy/eggs/__init__.py", line 195, 
> >>> in resolve
> >>>   return self.version_conflict( e.args[0], e.args[1] )
> >>> File "/Users/myuserid/galaxy-dist/lib/galaxy/eggs/__init__.py", line 226, 
> >>> in version_conflict
> >>>   r = pkg_resources.working_set.resolve( ( dist.as_requirement(), ), env, 
> >>> egg.fetch )
> >>> File 
> >>> "/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/pkg_resources.py",
> >>>  line 565, in resolve
> >>>   raise DistributionNotFound(req)  # XXX put more info here
> >>> pkg_resources.DistributionNotFound: numpy==1.6.0
> >>> Fetch failed.
> >>> [~/galaxy-dist] myuserid 10:12 AM >
> >>> 
> >>> 
> >>> 
> >>> ___________________________________________________________
> >>> Please keep all replies on the list by using "reply all"
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> >> 
> 
> 
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