I'm sure this has been mentioned before but perhaps it has been fixed.

I'm writting a wrapper of a Java tool for Galaxy. The tool throws info to stderr even when working properly, and Galaxy interprets it as a bug. Is there any way of redirecting stderr (It seems that normal UNIX redirection to a file does not work) or making Galaxy ignore it?


Mikel Egaña Aranguren, PhD

Marie Curie post-doc at Ontology Engineering Group, UPM

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