I am trying to use Galaxy to intersect different sets of genomic
intervals. When I do this, I get the following error.
Skipped 10 invalid lines of 1st dataset, 1st line #20: "chr10 131694149
131694408", problem: 536870912 is larger than the size of this BitSet

I have tried using different sets of intervals, in both interval and BED
format and used the two queries in different order in the intersect
tool, but I cannot seem to resolve the problem. The error message will
differ in the number of "invalid lines" skipped, but when I check the
intervals they appear to be alright. Could anyone help?

Thank you very much,
Chamith Fonseka

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