Hi Alex, That code is ancient - I would suggest disabling the memdump in your configuration unless you need it.
--nate Alex R Bigelow wrote: > Hi, > I restarted my Galaxy server this morning (it was working fine before), but > now I'm getting the following error: > > Error at initialization of module heapycTraceback (most recent call last): > File "/export/home/alex/Apps/galaxy-dist/lib/galaxy/web/buildapp.py", line > 82, in app_factory > app = UniverseApplication( global_conf = global_conf, **kwargs ) > File "/export/home/alex/Apps/galaxy-dist/lib/galaxy/app.py", line 78, in > __init__ > self.memdump = memdump.Memdump() > File "/export/home/alex/Apps/galaxy-dist/lib/galaxy/util/memdump.py", line > 24, in __init__ > self.heapy = guppy.hpy() > File > "/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/__init__.py", > line 35, in hpy > return r.guppy.heapy.Use > File > "/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py", > line 44, in __getattr__ > return self._share.getattr(self, name) > File > "/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py", > line 187, in getattr > d = self.getattr2(inter, cache, owner, name) > File > "/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py", > line 202, in getattr2 > x = self.getattr_package(inter, name) > File > "/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py", > line 250, in getattr_package > x = self.makeModule(x, name) > File > "/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py", > line 310, in makeModule > return Share(module, self, module.__name__, Clamp) > File > "/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py", > line 176, in __init__ > getattr(inter, name) > File > "/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py", > line 44, in __getattr__ > return self._share.getattr(self, name) > File > "/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py", > line 187, in getattr > d = self.getattr2(inter, cache, owner, name) > File > "/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py", > line 204, in getattr2 > x = self.getattr3(inter, name) > File > "/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py", > line 272, in getattr3 > pa = getattr(pa, at) > File > "/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py", > line 44, in __getattr__ > return self._share.getattr(self, name) > File > "/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py", > line 187, in getattr > d = self.getattr2(inter, cache, owner, name) > File > "/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py", > line 202, in getattr2 > x = self.getattr_package(inter, name) > File > "/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py", > line 239, in getattr_package > x = __import__(self.makeName(name), globals(), locals()) > File > "/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/heapy/View.py", > line 556, in <module> > prime_builtin_types() > File > "/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/heapy/View.py", > line 539, in prime_builtin_types > import guppy.heapy.heapyc > File > "/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/sets/__init__.py", > line 3, in <module> > from setsc import BitSet # base bitset type > ImportError: > /export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/sets/setsc.so: > undefined symbol: _PyLong_AsScaledDouble > > > I think it downloaded a new package when I tried to start it; I think I may > have found a relevant thread with a patch at > http://aur.achlinux.org/packages.php?ID=43710 > but I'm not sure how to go about applying it. > > Thanks, > Alex Bigelow > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
