Forget #2, I got confused with something else. :)

[] On Behalf Of Chorny, Ilya
Sent: Wednesday, September 28, 2011 4:06 PM
Subject: Re: [galaxy-dev] GTF files in Cufflinks and Tophat


1.)    Would you be interested in a feature in which the gtf files could be 
"locally cached" instead of only "from history"?

2.)    Would you be interested in a feature in which cufflinks choses the 
genome in a fashion similar to how samtools know which which genome to use? 

<when value="cached">

        <param name="input1" type="data" format="sam" metadata_name="dbkey" 
label="SAM File to Convert">

           <validator type="unspecified_build" />

        <validator type="dataset_metadata_in_file" 
filename="sam_fa_indices.loc" metadata_name="dbkey" metadata_column="1" 
message="Sequences are not currently available for the specified build." 
line_startswith="index" />



I am happy on working on these changes if they will be put into galaxy-central.



Ilya Chorny Ph.D.
Bioinformatics Scientist I
Illumina, Inc.
9885 Towne Centre Drive
San Diego, CA 92121
Work: 858.202.4582

Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

Reply via email to